Online Microscopy Resources

A detailed list of over 400 cleaning products and their effectiveness against SARS-Cov-2.

abTEM is a pure Python code for running simulations of (scanning) transmission electron microscopy images using the multi -slice or PRISM algorithms. It is open-source, blazing fast, and extremely versatile and easy to extend.

An online talk discussing the foundations of deep learning for image analysis, its various applications and Q&As.

Analysis code for AFM raw data post-processing and Hertz model calculation to obtain Young's modulus for increasing indentation depths.

AFT is an open-source workflow to quantify alignment of fibrillar features in bioimages. It allows for evaluation of alignment lengthscale and works with a number of different imaging modalities.

An online workshop series containing short presentations of image analysis techniques, followed by hands-on sessions using AiviaWeb.

Introduction to R, an interactive environment for statistical computing.

A free 30-day trial of Vision4D, the modular software for working with multi-channel 2D, 3D and 4D images of almost any size.

Atomap is a Python library for analysing atomic resolution scanning transmission electron microscopy images. It relies on fitting 2D Gaussian functions to every atomic column in an image, and automatically finds all major symmetry axes.

The YouTube channel of Laser-Free Confocal Microscope manufacturers Aurox Ltd.

Online curated published antibody database, also providing AI-assisted reagent selection.

An image.sc forum containing lists of useful image analysis GitHub repositories and PDFs.

Purchase links from an industrial supplier of first aid and safety products.

Instructional videos for the Carl Zeiss LSM 880 with Airyscan Confocal Microscope.

Free trial of Celleste 6 image analysis software offering powerful tools to segment and analyse complex images. Optional packages also provide 2D/3D image deconvolution.

Cell image analysis software capable of automatically processing images and analysing using machine learning.

A series of tutorial videos for image analysis in CellProfiler by Neil Anthony from Emory's Integrated Cellular Imaging facility.

Coloc-Tesseler is an interactive software platform that allows co-localisation analysis of 2D and 3D localisation microscopy data.

DECODE is a Python and Pytorch based deep learning tool for high density 3D single molecule localisation microscopy (SMLM) analysis.