Imaging & Cytometry Laboratory - University of York

Established in 2002, @YorkBioimaging and Cytometry lab has become one of the best known and successful international core facilities. It serves over 200 different users and groups per year with significant external user/client base with 10 dedicated staff. The laboratory provides open access to a diverse and comprehensive range of microscopes and cytometers. From high-end confocal microscopes, SEMs and TEMs, flow cytometers, cell sorter along with slide scanners, to novel quantitative label-free imaging systems and high-plex tissue imaging platforms. The 10 expert staff provide fully assisted technical support for research contracts, full service work and help to infrequent users whilst also providing excellent equipment resource for the experienced user. As part of the Bioscience Technology Facility we also provide an integrated approach for up and downstream technologies. The lab also runs a host of hands-on, interactive courses throughout the year attracting around 200 delegates from all backgrounds and from across the world. Alongside this, bespoke courses are also routinely undertaken on a user need basis. Beyond the commercially available systems, the lab has also established itself as a key beta test lab and acts as consult for both large, world leading manufacturers (e.g. Carl Zeiss, Beckman Coulter) through to new up-and-coming companies (e.g. Phasefocus, Tomocube).



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Expertise

Imaging Platforms

Keywords - Light Microscopy: Confocal microscopy | Widefield microscopy | Live cell imaging | Multi-photon microscopy | Core facility | Slide scanning | Ptychography | Digital Holography | Microscopy courses | Label Free Imaging | Super-resolution Airyscan | High Plex Imaging | LSCM | Slide Scanning | QPI | Tissue Imaging | FRAP, FRET, FRET, FCS, FCCS, TIRF, PALM, STORM | SIM spectral imaging | high content screening | Multiphoton | QPM | live-cell imaging | 96 well plate imaging | Laser-trapping, optical tweezers and LSCM
Keywords - Electron Microscopy: Transmission EM | Scanning Transmission EM | Scanning EM (FEG) | Cryo-SEM | Probe development and high resolution imaging | TEM | SEM | cryo-EM | Cryo-TEM | Low pressure SEM | liquid EM | Volume EM | vEM | Elemental Analysis | EDAX

Keywords: Flow Cytometry | FACS | Cell Sorting | single cell deposition | single cell analysis | sterile sorting | Spectral Cytometry | Imaging Cytometry | Imaging Cell Sorting 

The facility houses:

Light microscopy

  • Laser Scanning Confocal Microscopes - 3 Zeiss laser scanning microscopes; 2x Zeiss LSM980 (one on an invert with Airyscan 2 and multiphoton, one on an upright stand) LSM880 with AiryScan. All equipped with a range of lasers (405-633nm), objectives and live-cell incubators
  • Zeiss ELYRA 7 for SIM/PALM/STORM and live cell imaging 
  • Cytation 5 for 96 well plate fluorescence imaging with live cell incubation
  • Zeiss Axio Observer 7 for fluorescence and brightfield imaging including the Colibri7 and Definite Focus with live cell incubation
  • Slide Scanner -  Zeiss AxioScan Z1 fluorescence and brightfield slide scanner
  • Live-Cell Imaging - The Phase Focus Livecyte 2 (label-free ptychographic Quantitative Phase Imaging system) and Tomocube systems for high-resolution 3D digital holography imaging. All with live cell and fluorescence and multiwell plate options  
  • Tissue Imaging – Nanostring DSP for up to 80 simultaneous antibody analysis and 15,000 RNA analysis and 10X Visium options catering for most spatial omics approaches

Electron Microscopy

  • Zeiss Gemini 460 FEGSEM - 200V to 30kV with Off-axis SE2, In-Lens SE1, In-Lens ESB, Volume-BSD, a-STEM, Octane Elite EDX detectors. Including the VoluTome diamond knife in-chamber ultramicrotome for serial block face volume EM

Flow Cytometry

  • Cell Sorting – Beckman Coutler Astrios, a 4 laser 20+ detector system with 6 way, multiwell plate sorting capabilities, Becton Dickinson FACSDiscover S8 imaging cell sorter, plus a Beckman Coulter CytoFLEX SRT for user friendly cell sorting.
  • Flow Cytometry Analysers – Beckman Coulter 3x CytoFLEX (2x 6 laser 21 colour LX systems and 1x 4 laser 11 colour S options), BD FACSDiscover S8, BD Fortessa X20. All with multiwell plate loading options.

Applications

Keywords - Biological: Cell Biology | Neurobiology | Developmental Biology | Immunobiology | Plant Biology | Zebrafish | Drosophila | Microbiology | Bio-materials | Materials

Keywords - Material: Material | reflection | fibres | surface | 3D | luminescence

 

Sample Preparation

Keywords - Biological: Resin embedding | Ultrathin sectioning | Cryosectioning | Immunolabelling | Plunge Freezing | Freeze substitution | Critical Point Drying | Freeze fracture | Metal coating | Negative stain | Photoconversion | Correlative Light and EM | Immunofluorescence | Cryostat sectioning | Vibrating microtome | H&E staining | Live Cell

Users normally prepare their own samples for light microscopy with service provision for resin embedding and sectioning for LM and EM, however all options are available.

Data Analysis

Keywords - Software: ImageJ | FIJI | iQ | ImagePro | Arivis | TissueGnostics | HistoQuest | TissueQuest | FCS Express | FlowJo

 

Shared Access

The Bioscience Technology Facility is an open-access facility open to internal as well as external commercial & external academic. The microscopes are charged at an hourly rate for DIY work with additional staff costs for full service work. Quotes available for full service work and research contracts where necessary. No extra fee is charged for training.

Funding

The facility works on a full cost recovery basis.



Point of Contact

Imaging & Cytometry Laboratory - University of York
Imaging and Cytometry Laboratory
University Road
Bioscience Technology Facility, University of York
York, YO10 5DD, United Kingdom


Peter O’Toole +44 (0)1904 32 8722

Staff List

Peter O'Toole (Lab Head)
Grant Calder
Paul Gunning
Karen Hodgkinson
Karen Hogg
Sukhveer Mann
Joanne Marrison
Graeme Park
Alex Payne-Dwyer
Clare Steele-King